PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9599
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 473aa    MW: 52910.5 Da    PI: 8.5784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9599genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-052648123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C++C+k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA9599 26 FVCEICNKGFQRDQNLQLHRRGH 48
                              89*******************88 PP

2zf-C2H216.32.7e-05102124123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k++  +s+ k H++t+
  Tp57577_TGAC_v2_mRNA9599 102 WKCDKCSKRYAVQSDWKAHQKTC 124
                               58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-82548No hitNo description
Gene3DG3DSA:3.30.160.601.5E-52548IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.4E-52648IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9492648IPR007087Zinc finger, C2H2
SMARTSM003550.0172648IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
SMARTSM00355966797IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-590123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.74E-897123No hitNo description
SMARTSM0035589102122IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MYFDEIDPSA EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSA  60
EVKKKVYVCP EPSCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH  120
QKTCGTREYK CDCGTIFSRY YSYIQIVPSY FRAKFCFKYL CMRKELRRDS FITHRAFCDA  180
LTEENNRVNQ GLTSGMPPNL QNQMHDPISS MPLKPNSNTS SELNNEYDPK NSLKSPTQEH  240
VPTPFRSNNA CGGMFSTSAG ALFGGPKTLP PSSSSLQLSS NSFNYFNDNK TGGLICGSAQ  300
MSATALLQKA AQIGSTSSNS GNCNSSMMQK SFVSSMISPN HVSGPIMMNQ PSYEHFNPLN  360
HNDLTNMAGV SGGGAFTNQL FQNNTNDIGM FSQISMGNDQ SSGLMKNMAE SNQLVHDFLG  420
IGGSNSSLHE PQQQQRLEAL THQRLEIMND FHHHQHHLPH DDSVMEKSIW DV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445040.0AC144504.14 Medicago truncatula clone mth2-34c9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494352.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ63e-98IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLV7CY060.0V7CY06_PHAVU; Uncharacterized protein
STRINGGLYMA02G17293.10.0(Glycine max)
STRINGGLYMA03G36990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-96indeterminate(ID)-domain 2